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    Home » Recipes » Breakfast » Muffins

    Vegan Gluten-Free Pumpkin Muffins (with Chocolate Chips)

    Published by Gwen Leron on September 15, 2017 (Updated October 20, 2022)

    5 from 20 ratings
    »
    62 Comments

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    Pinterest pin showing two images of vegan gluten-free pumpkin muffins, this image is for pinning this recipe to Pinterest.

    Perfectly spiced vegan gluten-free pumpkin muffins are ideal to make during the fall or any time of year! They’re soft, fluffy, and filled with warm, cozy flavour, plus, they’re egg-free and dairy-free.

    They’re quick and easy to make and if you prefer to use something other than chocolate chips, like nuts, seeds, or dried fruits, you can!

    A vegan gluten-free pumpkin muffin on a small white plate.

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    This recipe was inspired by my friend Christa's mom who would always bake pumpkin spice muffins and other treats. I remember being so excited when I'd go over after school and she had just baked a fresh batch.

    Those muffins were AMAZING, and obviously memorable since I still remember them after all these years. They were spiced perfectly, they were loaded with chocolate chips, and they were my favourite thing to eat when I visited their home.

    Over the years, I tried many times to re-create them and I've hit the mark with these vegan gluten-free pumpkin muffins.

    The major difference between these and the pumpkin spice muffins from my high school days is that these are vegan and gluten-free. But you wouldn't even know it.

    They're fluffy, flavourful, perfectly spiced, and so good, you'll want to make them ALL THE TIME! It's not just a fall recipe!

    Before you read all you need to know about making this recipe, if you're a pumpkin fan and you love pumpkin recipes, (like pumpkin pie, pumpkin donuts, and pumpkin pudding!) then you'll want to check out these other vegan gluten-free pumpkin recipes:

    • Pumpkin Chocolate Chip Cookies
    • Pumpkin Bread
    • Vegan Pumpkin Bars
    • Pumpkin Spice Overnight Oats
    • Pumpkin Spice Waffles
    • Pumpkin Steel Cut Oats
    • Pumpkin Baked Oatmeal

    Ingredients You'll Need

    Like all of my other vegan gluten-free muffin recipes, this one also calls for simple ingredients.

    I always recommend sticking with the recipe the way it's written for the best results, especially with vegan gluten-free baking, but below you will find info about each ingredient and what you can and cannot substitute.

    An overhead shot showing the ingredients needed to make vegan gluten-free pumpkin muffins.

    Ingredient and Substitution Notes

    Gluten-Free Flour Blend – I have only used Bob’s Red Mill Gluten-Free All-Purpose Flour (the one in the RED bag without xanthan gum) to make this recipe, I have not tried any others.

    It’s extremely important to always use the same flour the recipe calls for to get the expected results (not just this recipe, but any vegan gluten-free recipe you are following!) If you don't need this recipe to be gluten-free, you can make them just vegan pumpkin muffins by using regular flour, see the recipe notes below.

    NOTE: When baking, measuring your flour accurately is so important to get the best results. Check out my article about how to measure flour correctly before you start.

    Pumpkin Purée - Use unsweetened pure pumpkin purée for this recipe, NOT pumpkin pie filling. You can use canned purée or you can make homemade pumpkin purée. If you do not have access to pumpkin, you can use a different puréed squash, like butternut squash or you can make my vegan sweet potato muffins instead, which are similar to these.

    Sugar – I use coconut sugar in these muffins, but brown sugar can be used instead. I have not tried making this recipe with liquid sweeteners (like pure maple syrup or agave) or sugar alternatives, so I am unsure how they would work.

    Not all sugar is vegan, some are processed using animal bone char, so to be sure that yours is, buy an organic brand (organic sugar is not processed using bone char) or one that is labelled as vegan.

    Oil - This recipe is made without butter, instead, I use melted coconut oil, but any neutral-flavoured oil, like safflower, or sunflower can be used instead. If you use coconut oil, make sure that your other ingredients are at room temperature so it does not solidify when added to the recipe. I have not tried to make this recipe oil-free; the combination of the oil and pumpkin helps to give the muffins an extra soft and moist texture.

    Flax Eggs – Since this recipe is made without eggs, flax eggs are used as a replacement. Chia eggs will work as well if you cannot have flax.

    Spices – A mix of three spices is used to give the muffins their warm fall flavours, so they cannot be left out but if you have pre-blended pumpkin pie spice, you can use that instead. See the recipe notes if using pumpkin pie spice.

    Baking Powder and Baking Soda - Make sure these ingredients are both fresh, they’re both very important for the muffins to rise properly and have a perfect texture.

    Salt and Vanilla Extract - Just a little of each is needed to enhance the flavour of the muffins.

    Chocolate Chips - Use your favourite vegan chocolate chips, I always use vegan semi-sweet / dark chocolate chips. If you don't want to use chocolate chips, you can use chopped walnuts or pecans, raisins, dried cranberries, pumpkin seeds, or sunflower seeds.

    Not sure which chocolate chip brands are vegan? Read my article "Are Chocolate Chips Vegan" to find a comprehensive list of vegan brands to look for at your grocery store.

    How to Make Them

    (Note: I’ve outlined the step-by-step on how to make this recipe here, but find the full recipe, ingredients, and directions in the recipe card at the end of this post.)

    1. Mix the dry ingredients in a small bowl, and set aside.

    2. Mix the wet ingredients.

    3. Combine the wet and dry ingredients and mix them into a batter.

    4. Add the chocolate chips (if using) to the batter.

    A collage of four images showing the first sequence of steps needed to make vegan gluten-free pumpkin muffins.

    5. Stir the chocolate chips in.

    6. Divide the muffin batter into your prepared muffin pan. You can use either a spoon or an ice cream scoop to do this. I like using a scoop because it’s quicker and easier to divide the batter, this is the scoop I’m using in the picture below.

    7. Bake.

    8. Remove the muffins from the oven and let them sit in the pan for a few minutes before removing them and placing them on a cooling rack.

    A collage of four images showing the second sequence of steps needed to make vegan gluten-free pumpkin muffins.

    Storing Leftovers and Freezing

    These muffins will keep for up to four days at room temperature, in an airtight container. They are best the day of and the day after they were baked. They will begin to dry out the longer they sit.

    Freezing

    To freeze, once they have thoroughly cooled, wrap them tightly so they're airtight, place them in a container or freezer bag, and freeze.

    They will keep in the freezer for up to two months. When you're ready to serve, thaw at room temperature. You can even take it a step further and warm them up in a toaster oven or microwave.

    Want more muffins? Be sure to look through this list to see all of my vegan gluten-free muffin recipes!

    What's the Texture Like

    If this is the first time you're making a vegan gluten-free recipe, you may have heard that they're not great, that they're always dry, taste strange, or that they fall apart. That's not the case with these muffins.

    This recipe, like all of my others, has been tested extensively and made by many of my readers (take a look through the comments below!).

    They have a fluffy texture that's soft and moist, exactly how a muffin should be!

    But to get this texture, you must follow the recipe exactly as it’s written. If you make any substitutions or changes to the recipe in any way, you risk your muffins not turning out as they should.

    An overhead shot of a pumpkin chocolate chip muffin cut in half to show the fluffy inside.

    Tips for Success

    • Use the same flour I use. Baking vegan gluten-free can be tricky because different flours produce different results. I know this particular flour works perfectly for this recipe, so to duplicate that perfection, please use Bob’s Red Mill Gluten-Free All-Purpose Flour (in the RED bag!).
    • Measure and have all your ingredients ready to go before starting. This will make the process run smoothly, quickly, and easily. Make sure all of your ingredients are at room temperature.
    • Measure your ingredients correctly. I highly recommend using a scale (this is one I own and love) and my weight measurements when making this recipe. If you don’t have a scale, lightly spoon the flour into your measuring cup until it is overflowing and then drag the flat edge of a butter knife across the top to level it off. (NEVER dunk the measuring cup into the flour to fill your measuring cup because this will guarantee an incorrect measurement of up to 1.5x more flour and a recipe fail.) Learn more about how to measure flour correctly.
    • Make sure your baking powder and baking soda are fresh. These are important ingredients that make the muffins rise and become fluffy. If they are not fresh, your muffins will turn out dense and gummy.
    • Don’t over-bake. If over-baked, you’ll end up with dry, crumbly muffins.
    • Read this post from top to bottom before you start. I’ve included many tips and tricks to get things right. Also read through the actual recipe before getting started.
    • Follow the recipe exactly as it’s written for the very best results.
    A pumpkin spice muffin on a plate, the muffin wrapper has been peeled away.

    Are you new to vegan gluten-free baking? If so, be sure to read all of my vegan gluten-free baking tips!

    If You Make This Recipe

    Please tell me how your delicious pumpkin spice muffins turned out! Leave me a star rating and comment below or you can post a picture on Instagram and tag me so I can see them. I’m @delightfuladventures on Instagram.

    If You Like This Recipe

    You may also like these other vegan gluten-free muffin recipes:

    • Sweet Potato Muffins
    • Vegan Pumpkin Oatmeal Muffins
    • Applesauce Muffins
    • Pumpkin Spice Mini Muffins
    • Mini Chocolate Chip Muffins
    • Double Chocolate Muffins
    • Zucchini Chocolate Chip Muffins
    A gluten-free pumpkin muffin on a plate with its muffin wrapper peeled down.
    Print Recipe Pin Recipe SaveSaved!
    4.95 from 20 ratings

    Vegan Gluten-Free Pumpkin Muffins

    Perfectly spiced vegan gluten-free pumpkin muffins are ideal to make during the fall or any time of year! They’re soft and fluffy and filled with warm, cozy flavour, plus, they’re egg-free and dairy-free. They’re quick to make and you can use the add-ins you like best (chocolate chips, nuts, seeds, or dried fruits).
    Prep Time:15 minutes minutes
    Cook Time:18 minutes minutes
    Total Time:33 minutes minutes
    Author: Gwen Leron
    Course: Snack
    Cuisine: Gluten-Free
    Diet: Vegan
    Servings: 12

    Suggested Equipment:

    • Kitchen Scale
    • Muffin/Cupcake Pan
    • Large Scoop
    • Glass Mixing Bowls
    Prevent your screen from going dark

    Ingredients:

    • 2 tablespoons ground flax seeds
    • 6 tablespoons water
    • 1 ¾ cups (245g) gluten free flour blend (see important notes about flour below)
    • 1 teaspoon baking powder
    • 1 teaspoon baking soda
    • ¼ teaspoon salt
    • 1 teaspoon ground cinnamon (see note about spices below)
    • ½ teaspoon ground nutmeg
    • ½ teaspoon ground ginger
    • 1 cup (240g) unsweetened pumpkin puree (see note below)
    • ¾ cup (113g) coconut sugar
    • ½ cup (120ml) melted coconut oil (plus extra for greasing muffin pan)
    • 1 teaspoon vanilla
    • ¾ cup (135g) chocolate chips (raisins, nuts, or seeds can be used instead, see note below)

    Instructions:

    • Preheat oven to 350°F (177° C).
    • Prepare your flax eggs by whisking together ground flax seeds and water. Set aside to thicken.
    • Line a muffin pan with liners or generously grease the inside of each cup with coconut oil.
    • In a medium bowl, whisk together the flour, baking powder, baking soda, salt, cinnamon, nutmeg and ginger.
    • In a large bowl, mix the pumpkin puree, coconut sugar, coconut oil, vanilla, and flax eggs together. Stir until blended.
    • Slowly add the dry mixture to the wet mixture and stir until combined.
    • Fold in chocolate chips.
    • Using a spoon or a large scoop, divide batter into the 12 muffin cups.
    • Bake for 18-20 minutes or until toothpick inserted in the middle of the largest muffin comes out clean.
    • Let muffins cool in the muffin pan for a few minutes and then remove and place them on a cooling rack.

    Video:

    Recipe Notes:

    • Please read all of the info above and below before making this recipe.
    • It's important to know that different gluten-free flour blends use different ingredients and ratios, so results will always vary if you substitute. I have never used any other brand of flour to make this recipe (other than Bob's Red Mill Gluten Free All Purpose Baking Flour (Amazon link) in the red bag, NOT the blue bag), so please know that your results may not be the same as mine if substitute with another gluten-free flour blend.
    • I've tested this recipe with all-purpose flour and it works great, so if you aren't gluten-free, you can use regular flour (1 ¾ cups /219g) as a substitute for the gluten-free flour.
    • This recipe will NOT work with coconut flour or any other single gluten-free flour (like oat flour, almond flour, cassava flour etc.), it must be a blend, the one mentioned above for the best results.
    • Make sure to measure your flour correctly.
    • If you do not have the three separate spices needed for this recipe, replace them with 1 tablespoon of pumpkin pie spice.
    • Any type of neutral-flavoured oil can be used in place of coconut oil, such as safflower or sunflower.
    • Brown sugar may be used instead of coconut sugar.
    • These muffins will keep for up to four days at room temperature, in an airtight container. They are best the day of and the day after they are baked. They will begin to dry out the longer they sit.
    • To freeze, once they have fully cooled, wrap them up tightly so they're airtight, place them in a container or freezer bag, and freeze. They will keep in the freezer for up to two months. When you're ready to serve, thaw at room temperature.
    • Make your own pumpkin puree instead of buying the canned stuff. Click here to see how easy it is and how to do it yourself.
    • Nutrition info is based on one muffin made with chocolate chips and using the recipes as written. Nutrition info is only to be used as a rough guide. Click to learn how nutrition info is calculated on this website.

    Nutrition Info:

    Serving: 1muffin | Calories: 241kcal | Carbohydrates: 31g | Protein: 3g | Fat: 14g | Saturated Fat: 10g | Polyunsaturated Fat: 0.3g | Monounsaturated Fat: 0.4g | Sodium: 180mg | Potassium: 139mg | Fiber: 3g | Sugar: 16g | Vitamin A: 625IU | Vitamin C: 0.4mg | Calcium: 36mg | Iron: 1.6mg
    Did You Make This Recipe?If so, please share a picture with me on Instagram! Tag @delightfuladventures and hashtag #delightfuladventures. I can't wait to see!
    MuffinsSnacksGluten-FreeNo Nuts AddedChocolatePumpkinVanillaThanksgiving

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    Reader Interactions

    Comments

      4.95 from 20 votes (2 ratings without comment)

      Did You Make This Recipe or Have a Question About It? Cancel reply

      If you’ve made this recipe and loved it, I’d be so grateful if you left a comment and star rating. Your ratings help others discover my recipes so they can enjoy them, too. If you haven’t tried the recipe yet but have a question, feel free to ask, and I’ll get back to you as soon as I can. Thank you so much for your support!

      Sincerely,
      Gwen

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      Recipe Rating





    1. C says

      October 23, 2023 at 3:17 pm

      5 stars
      I made these today and they were so perfect!!! Light and airy on the inside!!!

      Reply
      • Gwen Leron says

        October 24, 2023 at 3:14 pm

        These are one of my all-time favourites, I'm so glad you like them, too! Enjoy what you have left 🙂

        Reply
    2. Kristen says

      September 01, 2022 at 11:47 pm

      5 stars
      Oh my gosh, these are fabulous!! I’m new to gluten-free baking and I’d never know they were GF if I hadn’t made them myself. I swapped applesauce for the oil and they turned out great. I can’t wait to try more of your recipes!

      Reply
      • Gwen Leron says

        September 02, 2022 at 1:15 pm

        I'm glad you enjoyed these, Kristen! This is one of my favourites that I make A LOT. Enjoy the rest!

        Reply
    3. Sharon says

      September 14, 2020 at 7:58 pm

      5 stars
      I don’t usually leave reviews BUT I don’t usually try out a gluten free vegan recipe and have it turn out perfectly perfect in every way the first time.! These were easy., delicious., and actually had a “normal” muffin texture! I only sprinkled a few chocolate chips on top and made a few without them altogether and they are amazing! I was a little worried when I tasted the batter because there wasn’t a lot of spice flavor and it tasted kinda beany from the flour but after baking, everything melded together great! I’m wondering if you’ve ever tried freezing them?
      Well done and thank you! Can’t wait to try out another recipe if yours!

      Reply
      • Gwen Leron says

        September 15, 2020 at 10:46 am

        Hi Sharon! I'm so glad you decided to leave a comment and especially happy that you liked the muffins. And yes, any time you use a bean based flour, the batter is always going to taste horrible, but the good thing is that it will taste nothing like the final result. You can definitely freeze these muffins for a month or two, BUT, I find that recipes made with this flour in particular, it's best to enjoy them fresh. I have plenty of other muffin recipes on my site, and they are all like normal muffins, so I hope you try some more. If you do, let me know how things go and also feel free to get in touch if you have any questions. Thanks for taking the time to leave your message 🙂

        Reply
    4. Jessica says

      July 22, 2020 at 5:09 pm

      5 stars
      Absolutely love these! I add crystallized ginger bits on top and that makes them even better. Thanks for the amazing recipe.

      Reply
      • Gwen Leron says

        July 23, 2020 at 9:35 am

        Very happy you like them, Jessica! This is one of the first recipes I "veganized" years ago! Ginger and pumkpin go so well together, so your addition of the crystallized ginger sounds amazing! Thanks so much for your note and rating, I appreciate them very much 🙂

        Reply
    5. Stella Hinojos says

      June 09, 2020 at 4:36 pm

      5 stars
      These are really good muffins!

      Reply
      • Gwen Leron says

        June 10, 2020 at 11:40 am

        Thanks Stella, so glad you like them! they are a big favourite here, too 🙂

        Reply
    6. Megan says

      February 07, 2020 at 1:55 pm

      These were fantastic . Thank you SO very much for the recipe. It's wonderful to find really good tasty recipes for those of us with all the food allergies. So appreciate your time and effort in making these available to the rest of us.

      Reply
      • Gwen Leron says

        February 10, 2020 at 4:09 pm

        You're welcome, Megan! So happy you enjoyed them. Thanks for taking the time to leave your note 🙂

        Reply
    7. J Helmer says

      December 05, 2019 at 10:32 pm

      5 stars
      My 8 year old daughter made these for our family and they were absolutely delicious. Thank you for sharing this recipe!

      Reply
      • Gwen Leron says

        December 06, 2019 at 10:34 am

        You're very welcome! So happy to hear she made them and everyone liked them. Thanks for your note 🙂

        Reply
    8. Natalie says

      September 28, 2019 at 8:20 pm

      5 stars
      This is the best gluten free/vegan muffin I’ve tried!! How ever I used 1/4 cup of applesauce instead of flax egg, and only 1/8 cup of oil. Literally so good I’ve already made them twice this season!!

      Reply
      • Gwen Leron says

        September 29, 2019 at 11:28 am

        Glad to hear the recipe worked well with your substitutions, Natalie! Happy to hear that you like the recipe, this is one of my favourite muffins of all that I make 🙂 Thanks so much for taking the time to leave your note!

        Reply
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