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    Home » Recipes » Breakfast » Muffins

    Mini Gluten-Free Vegan Apple Muffins

    Published by Gwen Leron on September 21, 2018 (Updated September 13, 2019)

    4.7 from 17 ratings
    »
    52 Comments

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    Vegan gluten free apple muffins that are filled with cinnamon and tiny pieces of fresh apples. These vegan apple muffins are easy to make and are the perfect snack for school lunch boxes.

    Easy mini gluten-free vegan apple muffins filled with diced apples and warm fall spices. These tiny, tasty two-bite treats are great for your kids' school snacks or for snacking on at home!

    Three Gluten Free Vegan Apple Muffins on a small white plate.

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    This time of year is always bittersweet for me, because it's the end of summer, my absolute favourite time of year.

    Gone are long hot days, eating BBQ out in the backyard, berry recipes, less rigid schedules, and lots of sun.

    But at the same time, it's sweet because fall brings with it recipes that contain warm, flavourful spices, filling comfort meals, cozy sweaters, hot chocolate, and covering up with warm fuzzy blankets while watching TV on the couch.

    Can you relate to any of this?

    And of course, fall is famous for apple recipes, like these easy gluten free apple muffins! These little muffins are filled with those familiar warm fall spices and loads of tiny apple pieces. Plus, this recipe, like all of my others, is egg free, dairy-free, and gluten free!

    Are you new to vegan gluten-free baking? If so, be sure to read all of my vegan gluten-free baking tips!

    How to Prepare the Apples

    You'll first peel and core the apple, then dice it up very small like in the picture below.

    You don't want the apple pieces to be too big because these muffins don't bake for very long, so you want them to be small enough to cook through.

    Chopped apples to add to the batter for Gluten Free Vegan Apple Muffins.

    How to Make Them

    (Note: I’ve outlined the step-by-step on how to make this gluten free apple muffins recipe here, but find the full recipe, ingredients, and directions at the end of this post.)

    You'll start out by whisking the dry ingredients together in one bowl, then mixing the wet ingredients together in another bowl.

    Next, add the wet ingredients to the dry ingredients, mix until combined, and then fold in the chopped apples.

    Wet ingredients being poured into dry ingredients to make the batter for Gluten Free Vegan Apple Muffins.

    The next step is to scoop the batter for your vegan gluten free apple muffins into a mini muffin pan and then bake them.

    (FYI, this is the mini muffin pan I have and love and this is the scoop I'm using in the picture below, it makes portioning out the muffin batter so much quicker and easier!)

    Can They Be Made In a Regular Muffin Pan?

    If you don't have a mini muffin pan or you just want larger muffins, you can definitely use a regular pan. You will need to bake them for longer, though.

    Bump the baking time up to 18 minutes or until a toothpick inserted in the middle of the largest muffin comes out clean.

    Batter for Gluten Free Vegan Apple Muffins being poured into muffin pan.

    The Cinnamon Sugar Topping

    Once the muffins come out of the oven, it's almost time for the fun part: coating the tops with cinnamon sugar!

    Your muffins should be fully cooled before moving on to this next step. Once they've cooled, you'll need to dip or brush each muffin top lightly, one by one, with melted coconut oil, then dip each muffin top into the cinnamon sugar mix.

    After that step, your apple cinnamon muffins will be done and ready for devouring!

    Gluten Free Vegan Apple Muffins being dipped in cinnamon sugar.
    Gluten Free Vegan Apple Muffins being held up for a close up shot.

    Expert Tips for Success

    I have a pumpkin spice mini muffin recipe that I've made countless times and they're always perfect, but a couple readers wrote to me saying they had problems with the batter being too thick.

    I helped them troubleshoot and in one case, the incorrect amount of liquid was used, and in another, coconut flour was used, which is a big no-no. 

    I wrote up some tips for that post and I'll repeat them here (since the recipes are similar) to ensure you have recipe success with your own mini vegan apple muffins:

    • Please do not substitute the gluten-free flour blend I recommend with coconut flour. Coconut flour is not an easy flour to work with and this recipe will not work if you use it. To make this particular recipe gluten-free, a gluten-free flour blend must be used. Coconut flour (or any other single gluten-free flour like almond or oat etc.) will NOT work with this recipe without making major modifications.
    • The only gf flour blend I’ve tested this recipe with is Bob’s Red Mill Gluten Free All Purpose Baking Flour. <– Click that link to see what it looks like. It's the one with the red label, not the blue label. You can buy it through that Amazon link or look for it at your grocery store. If this specific flour is not used, your results may not be the same as mine.
    • Note that the sugar and applesauce call for ¼ cup PLUS 1 tablespoon. Please don’t miss that extra 1 tablespoon of each ingredient.
    • Be sure that all ingredients are measured correctly. I recommend weighing your flour.
    • Before starting, read through my vegan gluten free baking tips.

    If you follow all of those tips and make the recipe as it is written, you'll have 24 of the most delicious gluten free apple muffins you've ever tried!

    A Gluten Free Vegan Apple Muffins being held up to show the inside texture.

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    If You Make This Recipe

    Let me know by leaving a comment and star rating it in the comments below or share a picture on Instagram and tag me so I can see!

    If You Like This Recipe

    You may also like these:

    • Old Fashioned Cake Doughnut Mini Muffins
    • Mini Chocolate Chip Muffins
    • How to Make Slow Cooker Applesauce
    • Vegan Gluten-Free Apple Upside Down Cake
    • Vegan Gluten-Free Apple Cinnamon Waffles
    • Apple Spice Instant Pot Steel Cut Oats
    • Vegan Apple Baked Oatmeal

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    Gluten Free Vegan Apple Muffins on a plate on a brown wooden table.
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    4.65 from 17 ratings

    Mini Gluten Free Vegan Apple Muffins

    Filled with diced apples and warm fall spices, these easy-to-make mini gluten free vegan apple muffins are great for your kids' school snacks or for snacking on at home!
    Prep Time:15 minutes minutes
    Cook Time:10 minutes minutes
    Total Time:25 minutes minutes
    Author: Gwen Leron
    Course: Snack
    Cuisine: Gluten-Free
    Diet: Vegan
    Servings: 24

    Suggested Equipment:

    • Kitchen Scale
    • Mini Muffin Pan
    • Small Scoop
    • Glass Mixing Bowls
    Prevent your screen from going dark

    Ingredients:

    • ¼ cup (60ml) melted coconut oil
    • ½ cup (120ml) unsweetened dairy-free milk
    • ¼ cup + 1 tablespoon (78g) unsweetened applesauce
    • 1 teaspoon vanilla extract
    • 1 ½ cups (210g) gluten free flour blend **see important note about flour below**
    • 2 teaspoons baking powder
    • ⅛ teaspoon salt
    • ¼ cup + 1 tablespoon (63g) organic cane sugar or granulated sugar
    • 1 teaspoon ground cinnamon
    • ½ teaspoon ground nutmeg
    • ½ teaspoon ground ginger
    • ¼ teaspoon ground cardamom
    • ¾ cup (85g) diced apples (1 small apple, see note about apples below)

    For cinnamon sugar coating

    • 2 ½ tablespoons melted coconut oil
    • ¼ cup (50g) organic cane sugar or fine granulated sugar
    • 1 teaspoon ground cinnamon

    Instructions:

    • Preheat oven to 350° F (177° C).
    • Grease mini muffin pan (x 24), if needed.
    • In a small bowl, mix the melted coconut oil, non-dairy milk, applesauce, and vanilla together. Set aside.
    • In a large bowl, whisk the flour, baking powder, salt, sugar, cinnamon, nutmeg, ginger, and cardamom.
    • Pour wet ingredients into dry ingredients and mix well to combine.
    • Fold diced apples into the batter.
    • Divide batter evenly between the 24 muffins cups.
    • Bake for 9-11 minutes (until a tester comes out clean from the largest muffin).
    • While muffins are baking, add melted coconut oil to a small bowl and mix the sugar and cinnamon in another bowl
    • Remove muffins from the oven and cool for 10 minutes in the muffin pan.
    • Remove muffins from the muffin pan and place them on a cooling rack.
    • After fully cooled, dip 1 muffin at a time into the oil first. Make sure the entire top is coated with the oil and shake off any excess oil. Dip the same muffin into the sugar/cinnamon mixture, ensuring that the entire top is covered with the cinnamon sugar mix. Place muffin back onto the cooling rack.
    • Repeat with entire batch until done.

    Video:

    Recipe Notes:

    • Please read the section called "Expert Tips for Success" above before making this recipe to ensure success.
    • It's important to know that different gluten-free flour blends use different ingredients and ratios, so results will always vary if you substitute. I have never used any other flour to make this recipe (other than Bob's Red Mill Gluten-Free All-Purpose Baking Flour (the one in the red package, not the blue package!), so please know that your results may not be the same as mine if you substitute with a different blend.
    • This recipe will NOT work with coconut flour or any other single gluten-free flour, it must be a blend, preferably the one I link to above for the best results.
    • I use a Gala apple for this recipe, but any firm, sweet apple will work. Be sure that your apples are diced very small, see the image above for reference.
    • Have a look at the batter in this similar recipe to get an idea of what the consistency should be or watch the video in this post. If you use the flour recommended in this recipe and follow the recipe exactly as it is written, your recipe will work perfectly.
    • Store leftover muffins in an airtight container in the fridge for up to 2-3 days. The longer they sit, the more the cinnamon sugar on top will melt, so it's best to eat them as quickly as possible.
    • Nutrition info listed below is for 1 of 24 mini muffins and is only to be used as a rough guide. Click here for more info on how nutrition info on this website is determined.

    Nutrition Info:

    Serving: 1muffin | Calories: 81kcal | Carbohydrates: 11g | Protein: 1g | Fat: 4g | Saturated Fat: 3g | Sodium: 17mg | Potassium: 39mg | Fiber: 1g | Sugar: 6g | Vitamin C: 0.8mg | Calcium: 10mg | Iron: 0.4mg
    Did You Make This Recipe?If so, please share a picture with me on Instagram! Tag @delightfuladventures and hashtag #delightfuladventures. I can't wait to see!


    MuffinsSnacksGluten-FreeNo Nuts AddedAppleVanillaThanksgiving

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    Reader Interactions

    Comments

      4.65 from 17 votes (7 ratings without comment)

      Did You Make This Recipe or Have a Question About It? Cancel reply

      If you’ve made this recipe and loved it, I’d be so grateful if you left a comment and star rating. Your ratings help others discover my recipes so they can enjoy them, too. If you haven’t tried the recipe yet but have a question, feel free to ask, and I’ll get back to you as soon as I can. Thank you so much for your support!

      Sincerely,
      Gwen

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      Recipe Rating





    1. Melissa S says

      September 03, 2025 at 12:02 pm

      If I were to follow the recipe exactly, how and where could I add unflavored pea protein to punch up the benefits?

      Reply
      • Gwen Leron says

        September 04, 2025 at 4:51 pm

        Hi Melissa! I have not tried this before, so I'm just taking my best guess based on making this recipe countless times. Providing that you follow that recipe exactly as written and use the same flour I use, I would add the protein powder to the dry ingredients, I wouldn't change anything else in the recipe. Depending on how much protein powder you add, the batter may be too thick, you can add a little more liquid, a little at a time, to thin it out. The batter for this recipe is quite runny (there is a video in the post, have a look if you are able to see what it should look like). If you can get it to that consistency, or close, you should be good to go. If you try, please come back and let me know how it works out!

        Reply
    2. Sofia Bosca says

      June 08, 2025 at 12:59 am

      1 star
      I recently made these and they turned out horrible. The batter was like cookie dough and they are very hard and not nice. I used all of the correct ingredients. Was hoping for a better outcome....

      Reply
      • Gwen Leron says

        June 23, 2025 at 10:53 am

        Hi Sofia, sorry to hear that you ran into trouble with the batter. My first thought is that this sounds like an issue with the flour you used. Did you use the same one I recommended? The Bob's Red Mill all purpose gluten-free blend in the red bag? (not the blue bag!) Vegan gluten-free baking is very sensitive and using a different flour can result in exactly what you are describing, a batter that is thick and nothing like you expected.

        There is a video in this post that shows me making the muffins, if you are able, please take a look to see what the batter should look like, and I also include a link in the post to the flour you should use, please also refer to the picture of the batter above to see the batter, it should be runny, not thick like you described. If you have any questions, please feel free to ask.

        Reply
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